Some differences can be explained. Pacman was created after the Debian package manager (I guess that because Debian is older than Arch) . It is justified because Pacman is faster than Apt. But its too much work to replace Apt by Pacman comparing to the benefits.
But in some cases I don't know why. As instance I wonder why a distro, such as Void, created its own package manager instead of using the Alpine one. If Alpine is younger than Void, invert the sentence of course.
Its frustrating because Alpine gave me the fastest desktop. I dropped Alpine because some apps requires Glibc extensions !