this post was submitted on 20 Oct 2023
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I ask only for the first step. After I have all the referenced message IDs I will start working on the notmuch side to find and tag!
You can simply loop over all the org files, open one by one, and search within each file individually using (while (re-seacrch-forward ...) ...).
I plan on searching hundreds of files (all notes) so... some way that does not open all of them would be preferable.
If opening a file is a problem, you can create temporary buffer and then use
insert-file-contents
+ search +erase-buffer
.